species:   Drmel
pid:       MI0005817
parent:    dme-mir-962
paralog:   
locus:     NT_033779.5:5641298-5641389
matures:   ['AUAAGGUAGAGAAAUUGAUGCUGUC', 'CAGACUUCAGUUUCAUUACCUUUCAA']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033779.5:5641298-5641389

1 out of bounds
504 alignments
504 proper strand
499 stranded perfect matches

               ***************************       ****************************               
GAUGGGGCACUCAGGCUAUAAGGUAGAGAAAUUGAUGCUGUCUACACUAUUCAGACUUCAGUUUCAUUACCUUUCAAUUUGUUUGCCCCCAU
...((((((..((((....(((((((.((((((((.((((...........))).).)))))))).)))))))....))))..))))))...
-----------------AUAAGGUAGAGAAAUUGAUGCUGUC-------------------------------------------------- l=25 a=248 c
---------------------------------------------------CAGACUUCAGUUUCAUUACCUUUCAA--------------- l=26 a=0 c*
-----------------AUAAGGUAGAGAAAUUGAUGCUGUC-------------------------------------------------- l=25 a=248 ma
---------------------------------------------------CAGACUUCAGUUUCAUUACCUUUCAA--------------- l=26 a=0 ma*

-----------------AUAAGGUAGAGAAAUUGAUG------------------------------------------------------- l=20 a=12 
-----------------AUAAGGUAGAGAAAUUGAUGC------------------------------------------------------ l=21 a=4 
-----------------AUAAGGUAGAGAAAUUGAUGCU----------------------------------------------------- l=22 a=11 
-----------------AUAAGGUAGAGAAAUUGAUGCUG---------------------------------------------------- l=23 a=5 
-----------------AUAAGGUAGAGAAAUUGAUGCUGU--------------------------------------------------- l=24 a=24 
-----------------AUAAGGUAGAGAAAUUGAUGCUGUC-------------------------------------------------- l=25 a=248 (c,ma)
-----------------AUAAGGUgGAGAAAUUGAUGCUGUC-------------------------------------------------- l=25 a=1 
-----------------AUAuGGUAGAGAAAUUGAUGCUGUC-------------------------------------------------- l=25 a=1 
-----------------AUAAGGUAGAGAAAUUGAUGCUGUCU------------------------------------------------- l=26 a=56 
-----------------AUAAGGUgGAGAAAUUGAUGCUGUCU------------------------------------------------- l=26 a=1 
------------------UAAGGUAGAGAAAUUGAUGCUGUCU------------------------------------------------- l=25 a=1 
-----------------------UAGAGAAAUUGAUGCUGUC-------------------------------------------------- l=19 a=2 
------------------------------------------------------ACUUCAGUUUCAUUACCUUUC----------------- l=21 a=43 
------------------------------------------------------ACUUCAGUUUCAUUACCUUUCA---------------- l=22 a=71 
------------------------------------------------------ACUUCAGUUUCAUUACCUUUCu---------------- l=22 a=1 
------------------------------------------------------ACUUCAGUUUCAUUACuUUUCA---------------- l=22 a=1 
------------------------------------------------------ACUUCAGUUUCAUUACCUUUCAA--------------- l=23 a=10 
-------------------------------------------------------CUUCAGUUUCAUUACCUUUCA---------------- l=21 a=7 
-------------------------------------------------------CUUCAGUUUCAUUACCUUUCAA--------------- l=22 a=5 

mb-01111
ax-1001001
ku-01
ss-101011101110
fn-111
